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CT genes description table

Source: R/utils.R
CT_genes.Rd

Cancer-Testis (CT) genes description, imported from CTdata

Usage

CT_genes

Format

A tibble object with 280 rows and 47 columns.

  • Rows correspond to CT genes

  • Columns give CT genes characteristics

Source

See scripts/make_CT_genes.R in CTdata for details on how this list of curated CT genes was created.

Value

A tibble of all 280 CT and CTP genes with their characteristics

Details

See CTdata::CT_genes documentation for details

Examples

CT_genes
#> # A tibble: 280 × 47
#>    ensembl_gene_id external_gene_name CT_gene_type testis_specificity
#>    <chr>           <chr>              <chr>        <chr>             
#>  1 ENSG00000234593 KAZN-AS1           CT_gene      testis_specific   
#>  2 ENSG00000131914 LIN28A             CT_gene      testis_specific   
#>  3 ENSG00000142698 C1orf94            CT_gene      testis_specific   
#>  4 ENSG00000237853 NFIA-AS1           CT_gene      testis_specific   
#>  5 ENSG00000137948 BRDT               CT_gene      testis_specific   
#>  6 ENSG00000198765 SYCP1              CT_gene      testis_specific   
#>  7 ENSG00000237463 LRRC52-AS1         CT_gene      testis_specific   
#>  8 ENSG00000215817 ZC3H11B            CT_gene      testis_specific   
#>  9 ENSG00000162843 WDR64              CT_gene      testis_specific   
#> 10 ENSG00000231532 LINC01249          CT_gene      testis_specific   
#> # ℹ 270 more rows
#> # ℹ 43 more variables: regulated_by_methylation <lgl>, X_linked <lgl>,
#> #   chr <chr>, strand <int>, transcript_start <int>, transcript_end <int>,
#> #   transcription_start_site <int>, GTEX_category <chr>, q75_TPM_somatic <dbl>,
#> #   max_TPM_somatic <dbl>, ratio_testis_somatic <dbl>, TPM_testis <dbl>,
#> #   lowly_expressed_in_GTEX <lgl>, multimapping_analysis <chr>,
#> #   HPA_scRNAseq_celltype_specific_nTPM <chr>, max_HPA_somatic <dbl>, …