Package index • CTexploreR

All functions

CCLE_expression(): Gene expression in CCLE Tumors

CT_correlated_genes(): Gene correlations in CCLE cancer cell lines

CT_genes: CT genes description table

DAC_induction(): Gene expression in cells treated or not by a demethylating agent

GTEX_expression(): Gene expression in normal tissues (GTEx)

HPA_cell_type_expression(): Gene expression in different human cell types

TCGA_expression(): Gene expression in TCGA tumors

TCGA_methylation_expression_correlation(): Methylation-Expression correlation of any genes in TCGA samples

all_genes: All genes description table

check_names(): Check spelling of entered variables

embryo_expression(): Gene expression in human embryos

embryos_mean_methylation(): Promoter methylation of any gene in early embryos

fetal_germcells_expression(): Gene expression in fetal germ cells

fetal_germcells_mean_methylation(): Promoter methylation of any gene in fetal germ cells

hESC_expression(): Gene expression in human embryonic stem cells

hESC_mean_methylation(): Promoter methylation of any gene in hESC

normal_tissue_expression_multimapping(): Expression values (TPM) of genes in normal tissues with or without multimapping

normal_tissues_mean_methylation(): Promoter methylation of any gene in normal tissues

normal_tissues_methylation(): Methylation of CpGs located in promoters in normal tissues

oocytes_expression(): Gene expression in oocytes

prepare_TCGA_methylation_expression(): Prepare methylation and expression data of a gene in TCGA tumors

set_fontsize(): Determine font size

subset_database(): Subset databases

testis_expression(): Gene expression in testis cells