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All genes description table

Source: R/utils.R
all_genes.Rd

All genes description, imported from CTdata

Usage

all_genes

Format

A tibble object with 24488 rows and 47 columns.

  • Rows correspond to CT genes

  • Columns give CT genes characteristics

Source

See scripts/make_all_genes.R in CTdata for details on how this list was created.

Value

A tibble of all 24 488 genes with their characteristics

Details

See CTdata::all_genes documentation for details

Examples

all_genes
#> # A tibble: 24,488 × 47
#>    ensembl_gene_id external_gene_name CT_gene_type testis_specificity 
#>    <chr>           <chr>              <chr>        <chr>              
#>  1 ENSG00000243485 MIR1302-2HG        other        not_testis_specific
#>  2 ENSG00000237613 FAM138A            other        not_testis_specific
#>  3 ENSG00000186092 OR4F5              other        not_testis_specific
#>  4 ENSG00000237491 LINC01409          other        not_testis_specific
#>  5 ENSG00000177757 FAM87B             other        not_testis_specific
#>  6 ENSG00000228794 LINC01128          other        not_testis_specific
#>  7 ENSG00000225880 LINC00115          other        not_testis_specific
#>  8 ENSG00000230368 FAM41C             other        not_testis_specific
#>  9 ENSG00000223764 LINC02593          other        not_testis_specific
#> 10 ENSG00000187634 SAMD11             other        not_testis_specific
#> # ℹ 24,478 more rows
#> # ℹ 43 more variables: regulated_by_methylation <lgl>, X_linked <lgl>,
#> #   chr <chr>, strand <int>, transcript_start <int>, transcript_end <int>,
#> #   transcription_start_site <int>, GTEX_category <chr>, q75_TPM_somatic <dbl>,
#> #   max_TPM_somatic <dbl>, ratio_testis_somatic <dbl>, TPM_testis <dbl>,
#> #   lowly_expressed_in_GTEX <lgl>, multimapping_analysis <chr>,
#> #   HPA_scRNAseq_celltype_specific_nTPM <chr>, max_HPA_somatic <dbl>, …