add FlowJo manual gates membership information to a flow frame

reads a flowjo workspace file using the CytoML package, and extract cell by cell information as to whether the considered cell is within or outside user chosen gates. Note that not only the selected gate, but also all its hierarchy of gates, will be checked when extracting the gate membership information.

Usage

addFlowJoGatesInfo(ff, gateNames, wspFile, ...)

Arguments

ff

a flowCore::flowFrame

gateNames

a character vector, containing the names of the flowJo gates to be checked

wspFile

a flowjo workspace

...

Extra arguments passed to getFlowJoLabels()

Value

the input flowFrame, filled with additional columns of logical one per checked gate. The name of the new columns match the name of the gates.