applyFlowJoGate() now accept a Flow Jo group name to look for samples. This can help to discriminate files in the nasty case when some sample files have the same base name.
CytoPipelineUtils 0.99.8
migrated to GHA cache v4
CytoPipelineUtils 0.99.7
implemented pkgdown customization
CytoPipelineUtils 0.99.6
anonymizeMarkers() can now work with no marker anonymization (only keyword changes)
in applyFlowJoGate(): try to avoid using ‘All Samples’ generic sample group to query flowjo workspace (in order to avoid CytoML warning when using ‘All Samples’)
In getFlowJoLabels(), if one of the cellTypes is not found in any sample of any group, issue warning instead of error, populates corresponding output with NA’s
CytoPipelineUtils 0.99.3
applyFlowJoGate() can now match sample file with sample names in wsp file, by using pattern matching, instead of full file name matching