Changelog

Source: NEWS.md

CytoPipelineUtils 0.99

CytoPipelineUtils 0.99.9

• applyFlowJoGate() now accept a Flow Jo group name to look for samples. This can help to discriminate files in the nasty case when some sample files have the same base name.

CytoPipelineUtils 0.99.8

• migrated to GHA cache v4

CytoPipelineUtils 0.99.7

• implemented pkgdown customization

CytoPipelineUtils 0.99.6

• anonymizeMarkers() can now work with no marker anonymization (only keyword changes)
• implemented addFlowJoGatesInfo()

CytoPipelineUtils 0.99.5

• in applyFlowJoGate(): try to avoid using ‘All Samples’ generic sample group to query flowjo workspace (in order to avoid CytoML warning when using ‘All Samples’)

CytoPipelineUtils 0.99.4

• Added getEventNbFromFJGates()
• In getFlowJoLabels(), if one of the cellTypes is not found in any sample of any group, issue warning instead of error, populates corresponding output with NA’s

CytoPipelineUtils 0.99.3

• applyFlowJoGate() can now match sample file with sample names in wsp file, by using pattern matching, instead of full file name matching

CytoPipelineUtils 0.99.2

• added 2nd version of removeDebrisFlowClust()
• applyFlowJoGate() can now use different flowJo wsp files, depending on pData

CytoPipelineUtils 0.99.1

• added support for FlowJo manual gating as a CytoProcessingStep
• used file.path() instead of paste0() to construct file paths

CytoPipelineUtils 0.99.0

• First version