perform manual gating from a FlowJo gate

perform manual gating by: reading a flowjo workspace file using the CytoML package, and apply one of the gates to the input flowFrame. Note that not only the selected gate, but also all its hierarchy of gates, will be applied to the input dataset.

Usage

applyFlowJoGate(ff, gateName, wspFile, FJGroupName = NULL, ...)

Arguments

ff

a flowCore::flowFrame

gateName

the name of the flowJo gate that will be applied

wspFile

a flowjo workspace

FJGroupName

optional flowjo group name in which to look for the sample file. This can be helpful in case of duplicate file names.

...

Extra arguments passed to getFlowJoLabels()

Value

a flowFrame containing only the events inside the gate