perform manual gating by: reading a flowjo workspace file using the flowWorkspace library, and apply the selected gates to the input flowFrame. Then provides nb of remaining events for the selected gates.
Usage
getEventNbFromFJGates(
ff,
wspFile,
gates = NULL,
defaultGates = c("leaves", "all"),
...
)Arguments
- ff
a flowCore::flowFrame
- wspFile
a flowjo workspace
- gates
vector of flowJo gate nodes to parse (should be common to all groups!). Default NULL then uses either all leaf node from first group, or all gates from first group, depending on 'defaultGates'.
- defaultGates
if gates are not specified, than triggers the choice of either :
all leaf nodes ('leaves') (the default)
all nodes ('all')
- ...
Extra arguments passed to
getFlowJoLabels()