Chapter 7 Conclusions

As a summary, analysing an RNA-Seq experiment entails:

1. Processing the raw data: QC, trimming, alignment and counting (see chapter 4).
2. Constructing the count matrix and the sample annotation (see section 4.7 and/or chapter 2).
3. Run a DESeq2 analysis (see chapter 5).
4. Perform an enrichment analysis (see chapter 6).