apply scale transforms

wrapper around flowCore::transform() that discards any additional parameter passed in (...) Additionally, some checks regarding channels correspondance is done: if transList contains transformations for channels that are not present in x, then these transformations are first removed.

Usage

applyScaleTransforms(x, transList, verbose = FALSE, ...)

Arguments

x

a flowCore::flowSet or a flowCore::flowFrame

transList

a flowCore::transformList

verbose

if TRUE, send a message per flowFrame transformed

...

other arguments (not used)

Value

the transformed flowFrame

Examples

data(OMIP021Samples)

transListPath <- file.path(system.file("extdata", 
                                       package = "CytoPipeline"),
                           "OMIP021_TransList.rds") 

transList <- readRDSObject(transListPath)

ff_c <- compensateFromMatrix(OMIP021Samples[[1]],
                             matrixSource = "fcs")  

ff_t <- applyScaleTransforms(ff_c, transList = transList)