NEWS.md
execute()
now stores the nb of events retained at each pre-processing step, to speed-up collectNbOfRetainedEvents()
collectNbOfRetainedEvents()
functionpData
in cache upon execute() to allow running consistently running several times for increasing number of samplessampleFiles<-
and pData<-
: make sure that order of sample files follow the one of pData
rownames if pData
exists.estimateScaleTransforms()
phenoData
slot in CytoPipeline objectreadSamples()
to allow passing a pData
parameterscompensateFromMatrix()
to allow passing a mapping based on a pData
variablereadSamples()
to allow selecting a random number of samples and removed selectSamples()
LazyData: true
in DESCRIPTION filepaste0(path, "/", filename)
by file.path(path, filename)
experimentName
and sampleFiles
are now parameters of all constructor version)CytoPipelineUtils
package