R/utils.R
computeScatterChannelsLinearScale.Rd
based on a referenceChannel
computeScatterChannelsLinearScale(
ff,
transList = NULL,
referenceChannel,
silent = TRUE
)
a flowCore::flowFrame
an initial flowCore::transformList
the reference channel to take target quantile values from. Can be defined as marker or channel name.
if FALSE, will output some information on the computed linear transformations
the transList with added linear scale transformations
data(OMIP021Samples)
ff <- OMIP021Samples[[1]]
refMarker <- "APCCy7 - CD4"
refChannel <- "780/60Red-A"
transList <- flowCore::estimateLogicle(ff,
channels = refChannel)
retTransList <-
computeScatterChannelsLinearScale(ff,
transList = transList,
referenceChannel = refMarker,
silent = TRUE
)