compensate with additional options

: this is a simple wrapper around the flowCore::compensate() utility, allowing to trigger an update of the fluo channel names with a prefix 'comp-' (as in FlowJo)

Usage

runCompensation(obj, spillover, updateChannelNames = TRUE)

Arguments

obj

a flowCore::flowFrame or flowCore::flowSet

spillover

compensation object or spillover matrix or a list of compensation objects

updateChannelNames

if TRUE, add a 'comp-' prefix to all fluorochrome channels (hence does not impact the columns related to FSC, SSC, or other specific keyword like TIME, Original_ID, File,...) Default TRUE.

Value

a new object with compensated data, and possibly updated column names

Examples

data(OMIP021Samples)

ff <- OMIP021Samples[[1]]
compMatrix <- flowCore::spillover(ff)$SPILL
ff <- runCompensation(ff, 
                      spillover = compMatrix, 
                      updateChannelNames = TRUE)