Automation and visualization of flow cytometry data analysis pipelines

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc license

What is CytoPipelineGUI?

CytoPipelineGUI is the companion package of CytoPipeline, and is used for interactive visualization. It implements two shiny applications : - a shiny app for interactive comparison of flow frames that are the results of CytoProcessingSteps of the same or different CytoPipeline experiments.
It is launched using the following statement: CytoPipelineCheckApp()
- a shiny app for interactive visualization and manual adjustments of scale transformation objects. It is launched using the following statement: ScaleTransformApp()


The CytoPipelineGUI code is provided under GPL license version 3.0 or higher. The documentation, including the manual pages and the vignettes, are distributed under a CC BY-SA 4.0 license.


If you use CytopipelineGUI in your research, please use the following citation:

Hauchamps P, Bayat B, Delandre S, Hamrouni M, Toussaint M, Temmerman S, Lin D, Gatto L (2024). “CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data.” BMC Bioinformatics, 25(1), 80. doi:10.1186/s12859-024-05691-z

or run citation("CytoPipelineGUI") to get the bibtex entry.