New depmap datasets and files infrastructure to directly download individual files. See ?DepMapFiles for details. <2024-02-25 Sun>
Changes in version 1.17.0
New devel version.
depmap 1.11
Changes in version 1.11.2
22Q2 data added for crispr, copyNumber, TPM, mutationCalls, metadata and achilles datasets. Note: 22Q2 is the last release to follow a quarterly release schedule. Future Depmap releases will follow a bi-annual release schedule with dataset updates every 6 months.
Changes in version 1.11.1
EH numbers have been updated in the latest dataset (see #78)
depmap 1.9
Changes in version 1.9.2
22Q1 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. New datasets were added, including gene_summaries and achilles describing Depmap Achilles screens and gene essentiality probabilities, respectively. New loading functions were created for these datasets. Newer versions for the other datasets were not released.
Changes in version 1.9.1
21Q4 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
Changes in version 1.9.0
New devel version for Bioc 3.15
Changes in version 1.7.1
21Q3 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
20Q4 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
Changes in version 1.5.0
New Bioc devel verison
depmap 1.3
Changes in version 1.3.2
20Q3 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
Changes in version 1.3.1
20Q2 data added
Included new proteomic dataset
expression variable in TPM dataset changed to rna_expression
depmap 1.1
Changes in version 1.1.3
The using_depmap vignette has been updated to illustrate how to visualize depmap data using ggplot2.
Changes in version 1.1.2
20Q1 data added
Changes in version 1.1.1
19Q4 data added
Updated loading functions (accessor functions)
19Q4 versions of rnai, RPPA and drug_sensitivity were not released for this quarter, and therefore the 19Q3 releases for these datasets are the most current versions.