scp package is used to process and analyse mass spectrometry-based single cell proteomics data. It relies on the
QFeatures package to manage and process
To install the stable version from Bioconductor:
if (!requireNamespace("BiocManager")) install.packages("BiocManager") BiocManager::install("scp")
To install the devel version from GitHub, you first need to ensure that you are using the
devel release of Bioconductor and make sure your installed libraries are valid.
Then, you can install
scp from Github.
To cite the
scp package in publications use:
Vanderaa Christophe and Laurent Gatto. Replication of Single-Cell Proteomics Data Reveals Important Computational Challenges. Expert Review of Proteomics, 1–9 (2021).
Vanderaa Christophe and Laurent Gatto. Replication of Single-Cell Proteomics Data Reveals Important Computational Challenges. bioRxiv 2021.04.12.439408; doi: https://doi.org/10.1101/2021.04.12.439408 (2021).
Feel free to use Github issues or the Bioconductor support site to ask question or report problems with
scp code is provided under a permissive Artistic 2.0 license. The documentation, including the manual pages and the vignettes, are distributed under a CC BY-SA license.