Single cell proteomics data processing

The scp package is used to process and analyse mass spectrometry-based single cell proteomics data. It relies on the QFeatures package to manage and process SingleCellExperiment objects.

Installation

To install the stable version from Bioconductor:

if (!requireNamespace("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("scp")

To install the development version from GitHub:

BiocManager::install("UCLouvain-CBIO/scp")

Asking for help

Feel free to use Github issues or the Bioconductor support site to ask question or report problems with scp.