All functions

aggregateFeaturesOverAssays()

Aggregate features over multiple assays

computeMedianCV_SCoPE2()

(Deprecated) Compute the median coefficient of variation (CV) per cell

computeSCR()

Compute the sample over carrier ratio (SCR)

divideByReference()

Divide assay columns by a reference column

medianCVperCell()

Compute the median coefficient of variation (CV) per cell

mqScpData

Example MaxQuant/SCoPE2 output

normalizeSCP()

Normalize single-cell proteomics (SCP) data

pep2qvalue()

Compute q-values

readSCP()

Read single-cell proteomics data as a QFeatures object from tabular data and metadata

readSingleCellExperiment()

Read SingleCellExperiment from tabular data

rowDataToDF()

Extract the rowData of a QFeatures object to a DataFrame

sampleAnnotation

Single cell sample annotation

scp1

Single Cell QFeatures data