Changelog

scpdata 1.11

scpdata 1.11.4

(nothing yet)

scpdata 1.11.3

  • leduc2022_pSCoPE: added cellenONE annotations
  • guise2024: added dataset

scpdata 1.11.2

  • khan2023: added dataset.

scpdata 1.11.1

  • Added contribution vignette.
  • gregoire2023_mixCTRL: added dataset.

scpdata 1.9

scpdata 1.9.2

  • woo2022: added woo2022_lung and woo2022_macrophage
  • leduc2022: added leduc2022_plexDIA and renamed leduc2022 to leduc2022_pSCoPE

scpdata 1.9.1

  • Updated citation

scpdata 1.9.0

  • New Bioconductor 3.18 (devel) release

scpdata 1.8

scpdata 1.8.0

  • New Bioconductor 3.17 (stable) release

scpdata 1.7

scpdata 1.7.0

  • New Bioconductor 3.17 (devel) release

scpdata 1.6

scpdata 1.6.0

  • New Bioconductor 3.16 (stable) release

scpdata 1.5

scpdata 1.5.6

scpdata 1.5.5

  • Added package sticker

scpdata 1.5.4

  • fix: fixed character encoding errors

scpdata 1.5.3

  • tests: make sure each dataset is available
  • docs: don’t run examples. They take too long and crash the checks.

scpdata 1.5.2

  • Added CITATION

scpdata 1.5.1

  • brunner2022: added dataset
  • derks2022: added dataset
  • add license statements
  • leduc2022: added dataset

scpdata 1.5.0

  • New devel (Bioc 3.16)

scpdata 1.4

  • New stable release (Bioc 3.15)

scpdata 1.3

scpdata 1.3.1

  • williams2020: added 2 new datasets (need to be sent to EH)
  • all: added supplementary metadata fields in metadata.csv.
  • zhu2019EL: split protein data into protein_intensity and protein_iBAQ
  • dou2019: modified peptide data by excluding low-quality PSMs

scpdata 1.3.0

  • New devel (Bioc 3.15)

scpdata 1.2

scpdata 1.2.0

  • New stable release (Bioc 3.14)

scpdata 1.1

scpdata 1.1.2

  • dou2019_*: Fixed duplicated data, added identification score and probabilities data, and generated peptide data.
  • zhu2018MCP: added protein data (intensity, LFQ and iBAQ)
  • zhu2018NC_*: added protein data (intensity, LFQ and iBAQ)
  • metadata: included additional meta fields: PreprocessingSoftware and LabelingProtocol

scpdata 1.1.1

  • Added the schoof2021 dataset <2021-10-06>

scpdata 1.1.0

  • New devel (Bioc 3.14)

scpdata 1.0

scpdata 1.0.0

  • New stable release (Bioc 3.13)

scpdata 0.99

scpdata 0.99.3

  • Updated documentation <2021-05-03>
  • Added liang2020_hela dataset <2021-04-23>

scpdata 0.99.2

  • Removed remaining tilde (U+223C) in man pages <2021-01-09>

scpdata 0.99.1

  • Removed tilde (U+223C) in man pages <2021-01-09>

scpdata 0.99.0

  • Bioconductor submission <2021-01-06>