Package index • scpdata

All functions

ai2025a: Ai et al., Cardiomyocytes Single Cell Proteomics, MCP (2025)
brunner2022: Brunner et al. 2022 (Mol. Syst. Biol.): cell cycle state study
cong2020AC: Cong et al. 2020 (Ana. Chem.): HeLa single cells
derks2022: Derks et al. 2022 - plexDIA (Nat. Biotechnol.): PDAC vs melanoma cells vs monocytes
dou2019_boosting: Dou et al. 2019 (Anal. Chem.): testing boosting ratios
dou2019_lysates: Dou et al. 2019 (Anal. Chem.): HeLa lysates
dou2019_mouse: Dou et al. 2019 (Anal. Chem.): murine cell lines
gregoire2023_mixCTRL: Grégoire et al. 2023 - mixCTRL (arXiv): benchmark using monocytes/macrophages
guise2024: Guise et al. 2020 (Cell Rep.): postmortem ALS spinal moto neurons
hu2023_K562: Hu et al, 2023 (The Journal of Physical Chemistry B): Correlated protein modules
khan2023: Khan et al, 2023 (biorRxiv): Epithelial–Mesenchymal Transition
krull2024: Krull et al, 2024 (Nature Communications): IFN-\(\gamma\) response
leduc2022(): Deprecated leduc2022 dataset
leduc2022_pSCoPE: Leduc et al. 2022 - pSCoPE (biorRxiv): melanoma cells vs monocytes
leduc2022_plexDIA: Leduc et al. 2022 - plexDIA (biorRxiv): melanoma cells
leduc2025: Leduc et al, 2025 (bioRxiv): Principles of protein abundance regulation across single cells in a mammalian tissue
liang2020_hela: Liang et al. 2020 (Anal. Chem.): HeLa cells (MaxQuant preprocessing)
petrosius2023_AstralAML: Petrosius et al. 2023 (bioRxiv): AML hierarchy on Astral.
petrosius2023_mES: Petrosius et al, 2023 (Nat. Comm.): Mouse embryonic stem cell (mESC) in different culture conditions
schoof2021: Schoof et al. 2021 (Nat. Comm.): acute myeloid leukemia differentiation
scpdata(): Single-Cell Proteomics Data Package
specht2019v2: Specht et al. 2019 - SCoPE2 (biorRxiv): macrophages vs monocytes (version 2)
specht2019v3: Specht et al. 2019 - SCoPE2 (biorRxiv): macrophages vs monocytes (version 3)
williams2020_lfq: Williams et al. 2020 (Anal. Chem.): MCF10A cell line
williams2020_tmt: Williams et al. 2020 (Anal. Chem.): 3 AML cell line
woo2022_lung: Woo et al. 2022 (Cell Syst.): 26 primary human lung cells
woo2022_macrophage: Woo et al. 2022 (Cell Syst.): LPS-treated macrophages
wu2026: Wu et al., 2026 (Nature Biotechnology): single-cell proteomic landscape of the developing human brain
zhu2018MCP: Zhu et al. 2018 (Mol. Cel. Prot.): rat brain laser dissections
zhu2018NC_hela: Zhu et al. 2018 (Nat. Comm.): HeLa titration
zhu2018NC_islets: Zhu et al. 2018 (Nat. Comm.): human pancreatic islets
zhu2018NC_lysates: Zhu et al. 2018 (Nat. Comm.): HeLa lysates
zhu2019EL: Zhu et al. 2019 (eLife): chicken utricle cells