Package index • CytoMDS

All functions

show(<DistSum>) DistSum(<matrix>) DistSum(<list>) dim(<DistSum>) dimnames(<DistSum>) `dimnames<-`(<DistSum>,<list>) `dimnames<-`(<DistSum>,<ANY>) ncol(<DistSum>) colnames(<DistSum>) `colnames<-`(<DistSum>) nrow(<DistSum>) rownames(<DistSum>) `rownames<-`(<DistSum>) nFeatures() featureNames(<DistSum>) `featureNames<-`(<DistSum>) `[`(<DistSum>,<ANY>,<ANY>,<ANY>) `[`(<DistSum>,<ANY>,<ANY>,<missing>) `[`(<DistSum>,<ANY>,<missing>,<ANY>) `[`(<DistSum>,<ANY>,<missing>,<missing>) as.matrix(<DistSum>) distByFeature(): DistSum class

EMDDist(): Calculate Earth Mover's distance between two samples

show(<MDS>) nDim() nPoints() pwDist() projections() projDist() stress() spp() eigenVals() pctvar() RSq() RSqVec() GoF() smacofRes(): MDS class

channelSummaryStats(): Summary statistics per channel computation

computeMetricMDS(): metric MDS projection of sample

ggplotDistFeatureImportance(): Plot of feature relative importance in distance

ggplotMarginalDensities(): Plot of channel intensity marginal densities

ggplotSampleMDS(): Plot of Metric MDS object

ggplotSampleMDSShepard(): Plot of Metric MDS object - Shepard diagram

ggplotSampleMDSWrapBiplots(): SampleMDS biplot wrapping

pairwiseEMDDist(): Pairwise Earth Mover's Distance calculation