Package index • CytoMDS

All functions

EMDDist(): Calculate Earth Mover's distance between two samples

show(<MDS>) nDim() nPoints() pwDist() projections() projDist() stress() spp() eigenVals() pctvar() RSq() RSqVec() GoF() smacofRes(): MDS class

channelSummaryStats(): Summary statistics per channel computation

computeMetricMDS(): metric MDS projection of sample

ggplotMarginalDensities(): Plot of channel intensity marginal densities

ggplotSampleMDS(): Plot of Metric MDS object

ggplotSampleMDSShepard(): Plot of Metric MDS object - Shepard diagram

ggplotSampleMDSWrapBiplots(): SampleMDS biplot wrapping

pairwiseEMDDist(): Pairwise Earth Mover's Distance calculation