Chapter 9 Session information

The following packages have been used to generate this document.

sessionInfo()

## R version 4.1.1 (2021-08-10)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Big Sur 10.16
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] C/UTF-8/C/C/C/C
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] SummarizedExperiment_1.22.0 Biobase_2.52.0             
##  [3] GenomicRanges_1.44.0        GenomeInfoDb_1.28.4        
##  [5] IRanges_2.26.0              S4Vectors_0.30.0           
##  [7] BiocGenerics_0.38.0         MatrixGenerics_1.4.3       
##  [9] matrixStats_0.60.1          rWSBIM1207_0.1.14          
## [11] gridExtra_2.3               patchwork_1.1.1            
## [13] hexbin_1.28.2               forcats_0.5.1              
## [15] stringr_1.4.0               dplyr_1.0.7                
## [17] purrr_0.3.4                 readr_2.0.1                
## [19] tidyr_1.1.3                 tibble_3.1.4               
## [21] ggplot2_3.3.5               tidyverse_1.3.1            
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-7           fs_1.5.0               lubridate_1.7.10      
##  [4] bit64_4.0.5            RColorBrewer_1.1-2     httr_1.4.2            
##  [7] tools_4.1.1            backports_1.2.1        bslib_0.3.0           
## [10] utf8_1.2.2             R6_2.5.1               DBI_1.1.1             
## [13] colorspace_2.0-2       withr_2.4.2            tidyselect_1.1.1      
## [16] bit_4.0.4              compiler_4.1.1         cli_3.0.1             
## [19] rvest_1.0.1            xml2_1.3.2             DelayedArray_0.18.0   
## [22] labeling_0.4.2         bookdown_0.24          sass_0.4.0            
## [25] scales_1.1.1           digest_0.6.28          rmarkdown_2.11        
## [28] XVector_0.32.0         pkgconfig_2.0.3        htmltools_0.5.2       
## [31] dbplyr_2.1.1           fastmap_1.1.0          highr_0.9             
## [34] rlang_0.4.11           readxl_1.3.1           rstudioapi_0.13       
## [37] jquerylib_0.1.4        farver_2.1.0           generics_0.1.0        
## [40] jsonlite_1.7.2         vroom_1.5.5            RCurl_1.98-1.4        
## [43] magrittr_2.0.1         GenomeInfoDbData_1.2.6 Matrix_1.3-4          
## [46] Rcpp_1.0.7             munsell_0.5.0          fansi_0.5.0           
## [49] lifecycle_1.0.0        stringi_1.7.4          yaml_2.2.1            
## [52] zlibbioc_1.38.0        grid_4.1.1             msmbstyle_0.0.19      
## [55] crayon_1.4.1           lattice_0.20-44        haven_2.4.3           
## [58] hms_1.1.0              knitr_1.34             pillar_1.6.2          
## [61] reprex_2.0.1           glue_1.4.2             evaluate_0.14         
## [64] modelr_0.1.8           png_0.1-7              vctrs_0.3.8           
## [67] tzdb_0.1.2             cellranger_1.1.0       gtable_0.3.0          
## [70] assertthat_0.2.1       xfun_0.26              broom_0.7.9           
## [73] ellipsis_0.3.2

pkgs <- c("Biobase", "BiocGenerics", "GenomeInfoDb", "GenomicRanges",
          "IRanges", "MatrixGenerics", "S4Vectors", "SummarizedExperiment",
          "base", "datasets", "dplyr", "forcats", "ggplot2", "grDevices",
          "graphics", "gridExtra", "hexbin", "matrixStats", "methods",
          "parallel", "patchwork", "purrr", "rWSBIM1207", "readr", "stats",
          "stats4", "stringr", "tibble", "tidyr", "tidyverse", "utils")

if (!require("BiocManager"))
   install.packages("BiocManager")
BiocManager::install(pkgs)