Chapter 13 Session information

The following packages have been used to generate this document.

sessionInfo()

## R version 4.5.0 (2025-04-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
## 
## Matrix products: default
## BLAS:   /opt/R-4.5/lib/R/lib/libRblas.so 
## LAPACK: /opt/R-4.5/lib/R/lib/libRlapack.so;  LAPACK version 3.12.1
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Europe/Brussels
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] rWSBIM1322_0.3.2            BiocStyle_2.38.0           
##  [3] SummarizedExperiment_1.40.0 Biobase_2.70.0             
##  [5] GenomicRanges_1.62.1        Seqinfo_1.0.0              
##  [7] IRanges_2.44.0              S4Vectors_0.48.0           
##  [9] BiocGenerics_0.56.0         generics_0.1.4             
## [11] MatrixGenerics_1.22.0       matrixStats_1.5.0          
## [13] gridExtra_2.3               patchwork_1.3.2            
## [15] hexbin_1.28.5               magrittr_2.0.4             
## [17] rWSBIM1207_0.1.19           forcats_1.0.1              
## [19] stringr_1.6.0               dplyr_1.2.0                
## [21] purrr_1.2.1                 readr_2.2.0                
## [23] tidyr_1.3.2                 tibble_3.3.1               
## [25] ggplot2_4.0.2               tidyverse_2.0.0.9000       
## [27] lubridate_1.9.5            
## 
## loaded via a namespace (and not attached):
##  [1] tidyselect_1.2.1    farver_2.1.2        S7_0.2.1           
##  [4] fastmap_1.2.0       digest_0.6.39       timechange_0.4.0   
##  [7] lifecycle_1.0.5     compiler_4.5.0      rlang_1.1.7        
## [10] sass_0.4.10         tools_4.5.0         utf8_1.2.6         
## [13] yaml_2.3.12         knitr_1.51          S4Arrays_1.10.1    
## [16] labeling_0.4.3      htmlwidgets_1.6.4   bit_4.6.0          
## [19] DelayedArray_0.36.0 xml2_1.5.2          RColorBrewer_1.1-3 
## [22] abind_1.4-8         withr_3.0.2         grid_4.5.0         
## [25] scales_1.4.0        cli_3.6.5           rmarkdown_2.30     
## [28] crayon_1.5.3        otel_0.2.0          rstudioapi_0.18.0  
## [31] httr_1.4.8          tzdb_0.5.0          cachem_1.1.0       
## [34] parallel_4.5.0      BiocManager_1.30.27 XVector_0.50.0     
## [37] vctrs_0.7.1         Matrix_1.7-4        jsonlite_2.0.0     
## [40] bookdown_0.34.2     hms_1.1.4           bit64_4.6.0-1      
## [43] crosstalk_1.2.2     jquerylib_0.1.4     glue_1.8.0         
## [46] DT_0.34.0           stringi_1.8.7       gtable_0.3.6       
## [49] GenomeInfoDb_1.46.2 UCSC.utils_1.6.1    msmbstyle_0.0.22   
## [52] pillar_1.11.1       htmltools_0.5.9     R6_2.6.1           
## [55] vroom_1.7.0         evaluate_1.0.5      lattice_0.22-9     
## [58] png_0.1-9           bslib_0.10.0        SparseArray_1.10.9 
## [61] xfun_0.56           pkgconfig_2.0.3

pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets",
          "dplyr", "forcats", "generics", "GenomicRanges", "ggplot2", "graphics",
          "grDevices", "gridExtra", "hexbin", "IRanges", "lubridate", "magrittr",
          "MatrixGenerics", "matrixStats", "methods", "patchwork", "purrr",
          "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors", "Seqinfo", "stats",
          "stats4", "stringr", "SummarizedExperiment", "tibble", "tidyr",
          "tidyverse", "utils")

if (!require("BiocManager"))
   install.packages("BiocManager")
BiocManager::install(pkgs)