The following packages have been used to generate this document.
## R version 4.5.0 (2025-04-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /opt/R-4.5/lib/R/lib/libRblas.so
## LAPACK: /opt/R-4.5/lib/R/lib/libRlapack.so; LAPACK version 3.12.1
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Europe/Brussels
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] rWSBIM1322_0.3.2 BiocStyle_2.36.0
## [3] SummarizedExperiment_1.38.1 Biobase_2.68.0
## [5] GenomicRanges_1.60.0 GenomeInfoDb_1.44.0
## [7] IRanges_2.42.0 S4Vectors_0.46.0
## [9] BiocGenerics_0.54.0 generics_0.1.4
## [11] MatrixGenerics_1.20.0 matrixStats_1.5.0
## [13] gridExtra_2.3 patchwork_1.3.0
## [15] hexbin_1.28.5 magrittr_2.0.3
## [17] rWSBIM1207_0.1.19 forcats_1.0.0
## [19] stringr_1.5.1 dplyr_1.1.4
## [21] purrr_1.0.4 readr_2.1.5
## [23] tidyr_1.3.1 tibble_3.2.1
## [25] ggplot2_3.5.2 tidyverse_2.0.0
## [27] lubridate_1.9.4
##
## loaded via a namespace (and not attached):
## [1] gtable_0.3.6 xfun_0.52 bslib_0.9.0
## [4] htmlwidgets_1.6.4 msmbstyle_0.0.22 lattice_0.22-6
## [7] tzdb_0.5.0 vctrs_0.6.5 tools_4.5.0
## [10] crosstalk_1.2.1 parallel_4.5.0 pkgconfig_2.0.3
## [13] Matrix_1.7-3 RColorBrewer_1.1-3 GenomeInfoDbData_1.2.14
## [16] lifecycle_1.0.4 compiler_4.5.0 farver_2.1.2
## [19] htmltools_0.5.8.1 sass_0.4.10 yaml_2.3.10
## [22] pillar_1.10.2 crayon_1.5.3 jquerylib_0.1.4
## [25] DT_0.33 DelayedArray_0.34.1 cachem_1.1.0
## [28] abind_1.4-8 tidyselect_1.2.1 digest_0.6.37
## [31] stringi_1.8.7 bookdown_0.34.2 labeling_0.4.3
## [34] fastmap_1.2.0 grid_4.5.0 SparseArray_1.8.0
## [37] cli_3.6.5 S4Arrays_1.8.0 utf8_1.2.5
## [40] withr_3.0.2 UCSC.utils_1.4.0 scales_1.4.0
## [43] bit64_4.6.0-1 timechange_0.3.0 XVector_0.48.0
## [46] httr_1.4.7 rmarkdown_2.29 bit_4.6.0
## [49] png_0.1-8 hms_1.1.3 evaluate_1.0.3
## [52] knitr_1.50 rlang_1.1.6 glue_1.8.0
## [55] BiocManager_1.30.25 xml2_1.3.8 rstudioapi_0.17.1
## [58] vroom_1.6.5 jsonlite_2.0.0 R6_2.6.1
To install all necessary packages to run all the code, please execute the following code:
pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets",
"dplyr", "forcats", "generics", "GenomeInfoDb", "GenomicRanges",
"ggplot2", "graphics", "grDevices", "gridExtra", "hexbin", "IRanges",
"lubridate", "magrittr", "MatrixGenerics", "matrixStats", "methods",
"patchwork", "purrr", "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors",
"stats", "stats4", "stringr", "SummarizedExperiment", "tibble",
"tidyr", "tidyverse", "utils")
Page built: 2025-06-16 using R version 4.5.0 (2025-04-11)