The following packages have been used to generate this document.
## R version 4.4.1 (2024-06-14)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /opt/Rpatched/lib/R/lib/libRblas.so
## LAPACK: /opt/Rpatched/lib/R/lib/libRlapack.so; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Europe/Brussels
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] rWSBIM1322_0.3.2 BiocStyle_2.34.0
## [3] SummarizedExperiment_1.36.0 Biobase_2.66.0
## [5] GenomicRanges_1.58.0 GenomeInfoDb_1.42.3
## [7] IRanges_2.40.1 S4Vectors_0.44.0
## [9] BiocGenerics_0.52.0 MatrixGenerics_1.18.1
## [11] matrixStats_1.5.0 gridExtra_2.3
## [13] patchwork_1.3.0 hexbin_1.28.5
## [15] magrittr_2.0.3 rWSBIM1207_0.1.19
## [17] forcats_1.0.0 stringr_1.5.1
## [19] dplyr_1.1.4 purrr_1.0.4
## [21] readr_2.1.5 tidyr_1.3.1
## [23] tibble_3.2.1 ggplot2_3.5.1
## [25] tidyverse_2.0.0 lubridate_1.9.4
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.1 farver_2.1.2 fastmap_1.2.0
## [4] digest_0.6.37 timechange_0.3.0 lifecycle_1.0.4
## [7] compiler_4.4.1 rlang_1.1.5 sass_0.4.9
## [10] tools_4.4.1 utf8_1.2.4 yaml_2.3.10
## [13] knitr_1.49 S4Arrays_1.6.0 labeling_0.4.3
## [16] htmlwidgets_1.6.4 bit_4.6.0 DelayedArray_0.32.0
## [19] xml2_1.3.7 RColorBrewer_1.1-3 abind_1.4-8
## [22] withr_3.0.2 grid_4.4.1 colorspace_2.1-1
## [25] scales_1.3.0 cli_3.6.4 rmarkdown_2.29
## [28] crayon_1.5.3 generics_0.1.3 rstudioapi_0.17.1
## [31] httr_1.4.7 tzdb_0.4.0 cachem_1.1.0
## [34] zlibbioc_1.52.0 parallel_4.4.1 BiocManager_1.30.25
## [37] XVector_0.46.0 vctrs_0.6.5 Matrix_1.7-0
## [40] jsonlite_1.9.1 bookdown_0.34.2 hms_1.1.3
## [43] bit64_4.6.0-1 crosstalk_1.2.1 jquerylib_0.1.4
## [46] glue_1.8.0 DT_0.33 stringi_1.8.4
## [49] gtable_0.3.6 UCSC.utils_1.2.0 munsell_0.5.1
## [52] msmbstyle_0.0.22 pillar_1.10.1 htmltools_0.5.8.1
## [55] GenomeInfoDbData_1.2.13 R6_2.6.1 vroom_1.6.5
## [58] evaluate_1.0.3 lattice_0.22-6 png_0.1-8
## [61] bslib_0.9.0 SparseArray_1.6.2 xfun_0.51
## [64] pkgconfig_2.0.3To install all necessary packages to run all the code, please execute the following code:
pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets",
"dplyr", "forcats", "GenomeInfoDb", "GenomicRanges", "ggplot2",
"graphics", "grDevices", "gridExtra", "hexbin", "IRanges", "lubridate",
"magrittr", "MatrixGenerics", "matrixStats", "methods", "patchwork",
"purrr", "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors", "stats",
"stats4", "stringr", "SummarizedExperiment", "tibble", "tidyr",
"tidyverse", "utils")Page built: 2025-04-03 using R version 4.4.1 (2024-06-14)