Chapter 13 Session information

The following packages have been used to generate this document.

sessionInfo()

## R version 4.5.0 (2025-04-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
## 
## Matrix products: default
## BLAS:   /opt/R-4.5/lib/R/lib/libRblas.so 
## LAPACK: /opt/R-4.5/lib/R/lib/libRlapack.so;  LAPACK version 3.12.1
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Europe/Brussels
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] rWSBIM1322_0.3.2            BiocStyle_2.36.0           
##  [3] SummarizedExperiment_1.38.1 Biobase_2.68.0             
##  [5] GenomicRanges_1.60.0        GenomeInfoDb_1.44.0        
##  [7] IRanges_2.42.0              S4Vectors_0.46.0           
##  [9] BiocGenerics_0.54.0         generics_0.1.4             
## [11] MatrixGenerics_1.20.0       matrixStats_1.5.0          
## [13] gridExtra_2.3               patchwork_1.3.0            
## [15] hexbin_1.28.5               magrittr_2.0.3             
## [17] rWSBIM1207_0.1.19           forcats_1.0.0              
## [19] stringr_1.5.1               dplyr_1.1.4                
## [21] purrr_1.0.4                 readr_2.1.5                
## [23] tidyr_1.3.1                 tibble_3.2.1               
## [25] ggplot2_3.5.2               tidyverse_2.0.0            
## [27] lubridate_1.9.4            
## 
## loaded via a namespace (and not attached):
##  [1] gtable_0.3.6            xfun_0.52               bslib_0.9.0            
##  [4] htmlwidgets_1.6.4       msmbstyle_0.0.22        lattice_0.22-6         
##  [7] tzdb_0.5.0              vctrs_0.6.5             tools_4.5.0            
## [10] crosstalk_1.2.1         parallel_4.5.0          pkgconfig_2.0.3        
## [13] Matrix_1.7-3            RColorBrewer_1.1-3      GenomeInfoDbData_1.2.14
## [16] lifecycle_1.0.4         compiler_4.5.0          farver_2.1.2           
## [19] htmltools_0.5.8.1       sass_0.4.10             yaml_2.3.10            
## [22] pillar_1.10.2           crayon_1.5.3            jquerylib_0.1.4        
## [25] DT_0.33                 DelayedArray_0.34.1     cachem_1.1.0           
## [28] abind_1.4-8             tidyselect_1.2.1        digest_0.6.37          
## [31] stringi_1.8.7           bookdown_0.34.2         labeling_0.4.3         
## [34] fastmap_1.2.0           grid_4.5.0              SparseArray_1.8.0      
## [37] cli_3.6.5               S4Arrays_1.8.0          utf8_1.2.5             
## [40] withr_3.0.2             UCSC.utils_1.4.0        scales_1.4.0           
## [43] bit64_4.6.0-1           timechange_0.3.0        XVector_0.48.0         
## [46] httr_1.4.7              rmarkdown_2.29          bit_4.6.0              
## [49] png_0.1-8               hms_1.1.3               evaluate_1.0.3         
## [52] knitr_1.50              rlang_1.1.6             glue_1.8.0             
## [55] BiocManager_1.30.25     xml2_1.3.8              rstudioapi_0.17.1      
## [58] vroom_1.6.5             jsonlite_2.0.0          R6_2.6.1

pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets",
          "dplyr", "forcats", "generics", "GenomeInfoDb", "GenomicRanges",
          "ggplot2", "graphics", "grDevices", "gridExtra", "hexbin", "IRanges",
          "lubridate", "magrittr", "MatrixGenerics", "matrixStats", "methods",
          "patchwork", "purrr", "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors",
          "stats", "stats4", "stringr", "SummarizedExperiment", "tibble",
          "tidyr", "tidyverse", "utils")

if (!require("BiocManager"))
   install.packages("BiocManager")
BiocManager::install(pkgs)