The following packages have been used to generate this document.
## R version 4.3.2 Patched (2023-12-27 r85757)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Manjaro Linux
##
## Matrix products: default
## BLAS: /usr/lib/libblas.so.3.12.0
## LAPACK: /usr/lib/liblapack.so.3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Europe/Brussels
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] rWSBIM1322_0.3.2 BiocStyle_2.30.0
## [3] SummarizedExperiment_1.32.0 Biobase_2.62.0
## [5] GenomicRanges_1.54.1 GenomeInfoDb_1.38.6
## [7] IRanges_2.36.0 S4Vectors_0.40.2
## [9] BiocGenerics_0.48.1 MatrixGenerics_1.14.0
## [11] matrixStats_1.2.0 gridExtra_2.3
## [13] patchwork_1.2.0 hexbin_1.28.3
## [15] magrittr_2.0.3 rWSBIM1207_0.1.17
## [17] forcats_1.0.0 stringr_1.5.1
## [19] dplyr_1.1.4 purrr_1.0.2
## [21] readr_2.1.5 tidyr_1.3.1
## [23] tibble_3.2.1 ggplot2_3.5.0
## [25] tidyverse_2.0.0 lubridate_1.9.3
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 farver_2.1.1 bitops_1.0-7
## [4] fastmap_1.1.1 RCurl_1.98-1.14 digest_0.6.34
## [7] timechange_0.3.0 lifecycle_1.0.4 ellipsis_0.3.2
## [10] compiler_4.3.2 rlang_1.1.3 sass_0.4.8
## [13] tools_4.3.2 utf8_1.2.4 yaml_2.3.8
## [16] knitr_1.45 S4Arrays_1.2.0 labeling_0.4.3
## [19] htmlwidgets_1.6.4 bit_4.0.5 DelayedArray_0.28.0
## [22] xml2_1.3.6 RColorBrewer_1.1-3 abind_1.4-5
## [25] withr_3.0.0 grid_4.3.2 fansi_1.0.6
## [28] colorspace_2.1-0 scales_1.3.0 cli_3.6.2
## [31] rmarkdown_2.25 crayon_1.5.2 generics_0.1.3
## [34] rstudioapi_0.15.0 tzdb_0.4.0 cachem_1.0.8
## [37] zlibbioc_1.48.0 parallel_4.3.2 BiocManager_1.30.22
## [40] XVector_0.42.0 vctrs_0.6.5 Matrix_1.6-5
## [43] jsonlite_1.8.8 bookdown_0.34.2 hms_1.1.3
## [46] bit64_4.0.5 crosstalk_1.2.1 jquerylib_0.1.4
## [49] glue_1.7.0 DT_0.32 stringi_1.8.3
## [52] gtable_0.3.4 munsell_0.5.0 msmbstyle_0.0.19
## [55] pillar_1.9.0 htmltools_0.5.7 GenomeInfoDbData_1.2.11
## [58] R6_2.5.1 vroom_1.6.5 evaluate_0.23
## [61] lattice_0.22-5 highr_0.10 png_0.1-8
## [64] bslib_0.6.1 SparseArray_1.2.4 xfun_0.42
## [67] pkgconfig_2.0.3To install all necessary packages to run all the code, please execute the following code:
pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets",
"dplyr", "forcats", "GenomeInfoDb", "GenomicRanges", "ggplot2",
"graphics", "grDevices", "gridExtra", "hexbin", "IRanges", "lubridate",
"magrittr", "MatrixGenerics", "matrixStats", "methods", "patchwork",
"purrr", "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors", "stats",
"stats4", "stringr", "SummarizedExperiment", "tibble", "tidyr",
"tidyverse", "utils")Page built: 2024-03-15 using R version 4.3.2 Patched (2023-12-27 r85757)