The following packages have been used to generate this document.
## R version 4.4.1 (2024-06-14)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /opt/Rpatched/lib/R/lib/libRblas.so
## LAPACK: /opt/Rpatched/lib/R/lib/libRlapack.so; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Europe/Brussels
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] rWSBIM1322_0.3.2 BiocStyle_2.34.0
## [3] SummarizedExperiment_1.36.0 Biobase_2.66.0
## [5] GenomicRanges_1.58.0 GenomeInfoDb_1.42.1
## [7] IRanges_2.40.1 S4Vectors_0.44.0
## [9] BiocGenerics_0.53.5 generics_0.1.3
## [11] MatrixGenerics_1.18.1 matrixStats_1.5.0
## [13] gridExtra_2.3 patchwork_1.3.0
## [15] hexbin_1.28.5 magrittr_2.0.3
## [17] rWSBIM1207_0.1.19 forcats_1.0.0
## [19] stringr_1.5.1 dplyr_1.1.4
## [21] purrr_1.0.2 readr_2.1.5
## [23] tidyr_1.3.1 tibble_3.2.1
## [25] ggplot2_3.5.1 tidyverse_2.0.0
## [27] lubridate_1.9.4
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.1 farver_2.1.2 fastmap_1.2.0
## [4] digest_0.6.37 timechange_0.3.0 lifecycle_1.0.4
## [7] compiler_4.4.1 rlang_1.1.5 sass_0.4.9
## [10] tools_4.4.1 utf8_1.2.4 yaml_2.3.10
## [13] knitr_1.49 S4Arrays_1.6.0 labeling_0.4.3
## [16] htmlwidgets_1.6.4 bit_4.5.0.1 DelayedArray_0.32.0
## [19] xml2_1.3.6 RColorBrewer_1.1-3 abind_1.4-8
## [22] withr_3.0.2 grid_4.4.1 colorspace_2.1-1
## [25] scales_1.3.0 cli_3.6.3 rmarkdown_2.29
## [28] crayon_1.5.3 rstudioapi_0.17.1 httr_1.4.7
## [31] tzdb_0.4.0 cachem_1.1.0 zlibbioc_1.52.0
## [34] parallel_4.4.1 BiocManager_1.30.25 XVector_0.46.0
## [37] vctrs_0.6.5 Matrix_1.7-0 jsonlite_1.8.9
## [40] bookdown_0.34.2 hms_1.1.3 bit64_4.6.0-1
## [43] crosstalk_1.2.1 jquerylib_0.1.4 glue_1.8.0
## [46] DT_0.33 stringi_1.8.4 gtable_0.3.6
## [49] UCSC.utils_1.2.0 munsell_0.5.1 msmbstyle_0.0.22
## [52] pillar_1.10.1 htmltools_0.5.8.1 GenomeInfoDbData_1.2.13
## [55] R6_2.5.1 vroom_1.6.5 evaluate_1.0.3
## [58] lattice_0.22-6 png_0.1-8 bslib_0.8.0
## [61] SparseArray_1.6.1 xfun_0.50 pkgconfig_2.0.3To install all necessary packages to run all the code, please execute the following code:
pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets",
"dplyr", "forcats", "generics", "GenomeInfoDb", "GenomicRanges",
"ggplot2", "graphics", "grDevices", "gridExtra", "hexbin", "IRanges",
"lubridate", "magrittr", "MatrixGenerics", "matrixStats", "methods",
"patchwork", "purrr", "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors",
"stats", "stats4", "stringr", "SummarizedExperiment", "tibble",
"tidyr", "tidyverse", "utils")Page built: 2025-02-26 using R version 4.4.1 (2024-06-14)