The following packages have been used to generate this document.
## R version 4.4.1 (2024-06-14)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 22.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=nl_BE.UTF-8
## [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=nl_BE.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=nl_BE.UTF-8 LC_NAME=C LC_ADDRESS=C
## [10] LC_TELEPHONE=C LC_MEASUREMENT=nl_BE.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Europe/Brussels
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] rWSBIM1322_0.3.2 BiocStyle_2.32.1 SummarizedExperiment_1.34.0
## [4] Biobase_2.64.0 GenomicRanges_1.56.1 GenomeInfoDb_1.40.1
## [7] IRanges_2.38.1 S4Vectors_0.42.1 BiocGenerics_0.50.0
## [10] MatrixGenerics_1.16.0 matrixStats_1.3.0 gridExtra_2.3
## [13] patchwork_1.2.0 hexbin_1.28.3 magrittr_2.0.3
## [16] rWSBIM1207_0.1.19 forcats_1.0.0 stringr_1.5.1
## [19] dplyr_1.1.4 purrr_1.0.2 readr_2.1.5
## [22] tidyr_1.3.1 tibble_3.2.1 ggplot2_3.5.1
## [25] tidyverse_2.0.0 lubridate_1.9.3
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.1 farver_2.1.2 fastmap_1.2.0 digest_0.6.36
## [5] timechange_0.3.0 lifecycle_1.0.4 compiler_4.4.1 rlang_1.1.4
## [9] sass_0.4.9 tools_4.4.1 utf8_1.2.4 yaml_2.3.10
## [13] knitr_1.48 S4Arrays_1.4.1 labeling_0.4.3 htmlwidgets_1.6.4
## [17] bit_4.0.5 DelayedArray_0.30.1 xml2_1.3.6 RColorBrewer_1.1-3
## [21] abind_1.4-5 withr_3.0.1 grid_4.4.1 fansi_1.0.6
## [25] colorspace_2.1-1 scales_1.3.0 cli_3.6.3 rmarkdown_2.27
## [29] crayon_1.5.3 generics_0.1.3 rstudioapi_0.16.0 httr_1.4.7
## [33] tzdb_0.4.0 cachem_1.1.0 zlibbioc_1.50.0 parallel_4.4.1
## [37] BiocManager_1.30.23 XVector_0.44.0 vctrs_0.6.5 Matrix_1.7-0
## [41] jsonlite_1.8.8 bookdown_0.34.2 hms_1.1.3 bit64_4.0.5
## [45] crosstalk_1.2.1 jquerylib_0.1.4 glue_1.7.0 DT_0.33
## [49] stringi_1.8.4 gtable_0.3.5 UCSC.utils_1.0.0 munsell_0.5.1
## [53] msmbstyle_0.0.22 pillar_1.9.0 htmltools_0.5.8.1 GenomeInfoDbData_1.2.12
## [57] R6_2.5.1 vroom_1.6.5 evaluate_0.24.0 lattice_0.22-6
## [61] highr_0.11 png_0.1-8 bslib_0.8.0 SparseArray_1.4.8
## [65] xfun_0.46 pkgconfig_2.0.3To install all necessary packages to run all the code, please execute the following code:
pkgs <- c("base", "Biobase", "BiocGenerics", "BiocStyle", "datasets", "dplyr", "forcats",
"GenomeInfoDb", "GenomicRanges", "ggplot2", "graphics", "grDevices", "gridExtra", "hexbin",
"IRanges", "lubridate", "magrittr", "MatrixGenerics", "matrixStats", "methods", "patchwork",
"purrr", "readr", "rWSBIM1207", "rWSBIM1322", "S4Vectors", "stats", "stats4", "stringr",
"SummarizedExperiment", "tibble", "tidyr", "tidyverse", "utils")Page built: 2024-08-27 using R version 4.4.1 (2024-06-14)